Handling 1099 filings manually can be time-consuming, error-prone, and stressful—especially during tax season. Whether you’re a solo CPA, managing a firm, or supporting dozens of clients, choosing the best 1099 software for accountants can significantly improve accuracy, compliance, and productivity.
In this guide, we’ll break down:
- What to look for in 1099 software
- Key features accountants need
- Top-rated 1099 software in 2025
- Pricing comparisons
- Tips for seamless bulk e-filing
What Is 1099 Software?
1099 software helps tax professionals generate, file, and manage IRS Form 1099s—used to report non-employee income. With the rise of freelancers and gig workers, 1099 filings have become increasingly common and essential for compliance.
The software simplifies:
- Data import from spreadsheets or accounting platforms
- E-filing with the IRS FIRE system
- Printing and mailing copies to recipients
- TIN matching and error correction
What to Look for in the Best 1099 Software for Accountants
| Feature | Why It Matters |
| Multi-client management | Handle multiple businesses or EINs from one dashboard |
| Bulk e-filing capabilities | File hundreds or thousands of 1099s quickly |
| Integration support | Sync with QuickBooks, Xero, Excel, or payroll tools |
| TIN verification | Reduces risk of IRS penalties for incorrect info |
| Secure cloud access | Protect sensitive tax data with encryption and compliance |
| Affordable per-form pricing | Important for firms filing high volumes |
| 1099-MISC, NEC, and more | Must support the latest IRS form types (MISC, NEC, etc.) |
Top 6 Best 1099 Software for Accountants (2025)
Track1099 (by Avalara)
Best For: Accountants and CPAs managing multiple clients
Key Features:
- Supports 1099-MISC, 1099-NEC, 1098, W-2, and more
- Integrates with QuickBooks, Xero, and Bill.com
- Bulk upload via Excel or API
- TIN matching and electronic delivery
Pricing: Starts at $2.90/form, with volume discounts
Pros:
- Intuitive interface
- Excellent for firms with dozens of clients
- Email delivery option reduces mailing needs
Tax1099
Best For: Accountants needing IRS-compliant, API-friendly solutions
Key Features:
- Real-time TIN matching
- E-filing for all major 1099 variants
- Cloud-based dashboard
- Strong audit trail and reporting
Pricing: Starts at $2.90/form; bulk discounts for 250+ forms
Pros:
- Supports e-signature for W-9 collection
- Ideal for developers and integrations
- Approved IRS e-filing provider
Yearli (by Greatland)
Best For: Accountants looking for robust filing + mailing options
Key Features:
- All-in-one: prepares, e-files, prints, and mails
- Desktop and online versions available
- Handles federal and state compliance
- Excellent customer service
Pricing: $4.95/form (Core); $1.25/form (Performance tier with volume)
Pros:
- Trusted industry name
- Ideal for firms that prefer full-service options
- Easy onboarding for new users
eFile4Biz
Best For: Budget-conscious accountants with mid-volume filing needs
Key Features:
- No software to download
- Cloud-based dashboard
- Includes print + mail to recipients
- IRS-authorized filing
Pricing: Starts at $3.25/form, discounts for 100+ forms
Pros:
- Affordable and simple to use
- No minimums
- Fast processing
1099 Pro
Best For: Enterprise-level firms and high-volume accountants
Key Features:
- Desktop and web-based versions
- Built-in TIN checking
- Bulk import from ERP and accounting systems
- Tracks compliance across multiple clients
Pricing: Custom pricing for enterprise accounts
Pros:
- High-performance software for large firms
- Highly customizable
- Great for tax service providers or payroll bureaus
QuickBooks 1099 E-File Service
Best For: Accountants already using QuickBooks Online
Key Features:
- Auto-generates 1099-NEC and 1099-MISC
- E-file directly from QuickBooks
- Supports contractor W-9 collection
- Delivers digital copies to recipients
Pricing: Starts at $15 for 3 forms, then $4/form
Pros:
- Seamless for QuickBooks users
- Minimal setup
- Great for small accounting teams
1099 Software Pricing Comparison (2025)
| Software | Starting Price | Best For |
| Track1099 | $2.90/form | Multi-client CPAs |
| Tax1099 | $2.90/form | API integration and compliance |
| Yearli | $1.25–$4.95/form | Full-service + mailing |
| eFile4Biz | $3.25/form | Low-cost small batch filing |
| 1099 Pro | Custom quote | Large firms and bulk filers |
| QuickBooks 1099 | $15 for 3 forms | QuickBooks accountants |
Tips for Using 1099 Software Efficiently
- Collect W-9s early
Get contractor information before year-end to prevent delays. - Verify TINs in advance
Use real-time TIN matching tools to reduce IRS rejections. - Use bulk upload templates
Most providers offer Excel or CSV import templates for fast uploads. - Set up multi-user access
Allow your team to collaborate on filings and approvals. - File early and double-check entries
Avoid last-minute errors and reduce client anxiety.
Conclusion
Selecting the best 1099 software for accountants depends on your volume, client base, and integration needs. For CPAs with multiple clients, Track1099 and Tax1099 are highly scalable. For budget-friendly simplicity, eFile4Biz or Yearli are great choices. QuickBooks users benefit from built-in tools, while large firms may prefer 1099 Pro.
No matter your practice size, cloud-based 1099 solutions make filing faster, more accurate, and fully compliant.
FAQs
1. Can I file multiple 1099s for different clients in one account?
Yes. Most professional-grade software like Track1099 and Tax1099 support multiple EINs and clients under one dashboard.
2. Is there free 1099 software for accountants?
While some platforms offer free trials, robust 1099 filing software for accountants typically charges per form or subscription.
3. Can I print and mail 1099s myself?
Yes, but many tools also offer built-in print-and-mail services to save time and reduce manual errors.
4. What forms are supported besides 1099-NEC?
Most software supports 1099-MISC, 1099-INT, 1099-DIV, 1099-K, 1098, W-2, and more.
5. How early can I start preparing 1099s?
You can start as early as Q4. It’s best to collect W-9s and verify TINs by December to avoid January stress.
Also read: Security Equipments: Types, Benefits, and How to Choose the Right System in 2025